File size: 1,285 Bytes
695d0c8 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | {
"dataset": "DeepSTARR enhancer sequences",
"zenodo_record": 5502060,
"source_url": "https://zenodo.org/records/5502060",
"file_md5": {
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"Sequences_Test.fa": "c2d831a6e2cfb9345fa5e52de76bb453",
"Sequences_activity_Train.txt": "4e65afa021fd426c74dbf24c31b8bbf9",
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"Sequences_activity_Test.txt": "011690ca80cf967d56fefd0c1386419f",
"DeepSTARR.model.json": "9b796f79441e53dc75dd79b911fff872",
"DeepSTARR.model.h5": "7e53a9351b2520a4713a5ffdb5f1566c"
},
"alphabet": "ACGT",
"sequence_length": 249,
"split_sizes": {
"train": 402278,
"validation": 40570,
"test": 41186
},
"ambiguous_sequences_removed": {
"train": 18,
"validation": 0,
"test": 0
},
"activity_columns": [
"Dev_log2_enrichment",
"Hk_log2_enrichment",
"Dev_log2_enrichment_scaled",
"Hk_log2_enrichment_scaled",
"Dev_log2_enrichment_quantile_normalized",
"Hk_log2_enrichment_quantile_normalized"
],
"generative_training": "official train split only",
"official_activity_predictor": "Keras weights ported exactly to PyTorch at evaluation"
}
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